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DTSTAMP:20210916T132446Z
LOCATION:Henry Dunant
DTSTART;TZID=Europe/Stockholm:20210705T133000
DTEND;TZID=Europe/Stockholm:20210705T140000
UID:submissions.pasc-conference.org_PASC21_sess104_pap128@linklings.com
SUMMARY:Stream-AI-MD: Streaming AI-driven Adaptive Molecular Simulations f
 or Heterogeneous Computing Platforms
DESCRIPTION:Paper\n\nStream-AI-MD: Streaming AI-driven Adaptive Molecular 
 Simulations for Heterogeneous Computing Platforms\n\nBrace, Salim, Subbiah
 , Ma, Emani...\n\nEmerging hardware tailored for artificial intelligence (
 AI) and machine learning (ML) methods provide novel means to couple them w
 ith traditional high performance computing (HPC) workflows involving multi
 -scale molecular dynamics (MD) simulations. We propose <em>Stream-AI-MD</e
 m>, a novel instance of applying deep learning methods to drive adaptive M
 D simulation campaigns in a <em>streaming</em> manner. We leverage the abi
 lity to run ensemble MD simulations on GPU clusters, while the data from a
 tomistic MD simulations are streamed continuously to AI/ML approaches to g
 uide the conformational search in a biophysically meaningful manner on a w
 afer-scale AI accelerator. We demonstrate the efficacy of <em>Stream-AI-MD
 </em> simulations for two scientific use-cases: (1) folding a small protot
 ypical protein, namely ββα-fold (BBA) FSD-EY and (2) under
 standing protein-protein interaction (PPI) within the SARS-CoV-2 proteome 
 between two proteins, nsp16 and nsp10. We show that <em>Stream-AI-MD</em> 
 simulations can improve time-to-solution by ~50X for BBA protein folding.&
 nbsp;Further, we also discuss performance trade-offs involved in implement
 ing AI-coupled HPC workflows on heterogeneous computing architectures.\n\n
 Domain: CS and Math, Life Sciences
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